- BaseX-Talk - mailman.uni-konstanz.de

line number and column
by Anders Hessellund 14 Jan '12

14 Jan '12

Hi, we are experimenting with BaseX as a database for a large set of local XML files (3000-4000). When we query for individual elements and attributes in this portfolio of XML documents, is there any way to get location information about concrete elements and attributes. Specifically, we need to know filename, line number and column of element (start tags) and attributes. Is this possible? And if so, how? Thanks, Anders

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RegExp bug
by Mark Boon 10 Jan '12

10 Jan '12

It's been a while since I did anything with BaseX. The last version I used was BaseX 6.5. Today I downloaded the latest version 7.0.2 and ran into a problem when trying to revive an old project. I get messages saying " [FORX0002] Invalid escape character: '\b'". Since the use of \b is rather essential to my project I had little choice but to investigate, so I retrieved the BaseX source code to see if I could determine the problem. I found the following in RegEx.java, line 88: if("0123456789cCdDniIrsStwW|.-^$?*+{}()[]\\".indexOf(c) == -1) REGESC.thrw(input, c); I believe that's a mistake and should include 'b' and read: if("0123456789bcCdDniIrsStwW|.-^$?*+{}()[]\\".indexOf(c) == -1) REGESC.thrw(input, c); When I make that modification my program works again as before. There may be more missing? I'm not especially a RegExp expert. And I'd like to make sure this modification didn't inadvertantly break something else that I just haven't noticed yet. Mark Boon

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Spatial XQuery?
by Schildmann, Ingo 10 Jan '12

10 Jan '12

Hi, Our company evaluates BaseX for our project. A new requirement is to show spatial data with a geographic information system. Are there any plans for a spatial xquery module for querying GML like the (experimental) module in eXist? http://exist-db.org/extensions.html#module_spatial Regards, Ingo Dr. Karb Informationstechnologien Im Wolfer 10 70599 Stuttgart Tel.: 0711 - 4 51 24 - 70 Fax: 0711 - 4 51 24 - 55 Web: http://www.karb.de <http://www.karb.de/> Mail: schildmann(a)karb.de <mailto:schildmann@karb.de> Skype: ischildmann

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function to give the current file being processed?
by jidanni＠jidanni.org 07 Jan '12

07 Jan '12

{comment {"Made by noise.xq, will get OVERWRITTEN"}} gives me $ basex noise.xq <?xml version="1.0" encoding="UTF-8"?> <kml xmlns="http://www.opengis.net/kml/2.2">  <Document>... Is there any function to enable me not to need to hardwire the name into the file?

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basex with ext3 vs ext4, [kjournald]
by Adrian Hossu 07 Jan '12

07 Jan '12

Hi all, I'm been running basex on two environments, one is my laptop with an SSD drive and ext4, the other is a server with raid-1 HDD and ext3. Using iotop, I am watching the disk access of the server and laptop, and comparing the two. After some update queries, I notice that the server (ext3) has a process, [kjournald], which writes for about 20 seconds at 600-1000KB/sec. This only begins after the update is complete and the java process actually stops writing. I am not experiencing such a thing on my laptop. If I do too many of these queries on the server, it will eventually hang for 20-30 seconds. I've copied the exact data on both the laptop and the server. Are there any recommended filesystem types for basex? Does it sound like I've configured something incorrectly, or should I add some more drives to my server and have them using ext4? Or is the difference SSD vs HDD? I never saw my SSD write speed go above 200KB/sec or so during the same queries. Any help would be greatly appreciated! - Adrian

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Re: [basex-talk] Query Across/Many XML Files With BaseX
by Lukas Lewandowski 02 Jan '12

02 Jan '12

Hi Jon, Currently I work on querying distributed XML collections. Therefore I tested also the local BaseX instance (without distribution) for some query performance. My used collection consists of about 1,600,000 XML news articles, each 10 KB size. One of my queries searches for news articles which contain a special keyword (using the full text index). It takes about 100ms for the evaluation. Happy new year. Lukas On 01.01.2012, at 22:53, Jon Morehouse wrote: > Hello Lukas, > Thanks for your response. I am simply looking at storing text in my xml articles. I would be recreating articles with xml and all pictures would be hyperlinked on an external server. I would say each file would be no larger than say 20 kB max. > I am also looking at simply recreating a localized search engine. In terms of scalability, in your opinion, do you think that Basex would be more sufficient for scaling and searching through content. I am hoping my local database grows to hold hundreds of thousands, maybe millions of articles and would like to access any single article by searching with keywords for my users. > > Anyways, I appreciate your response. Have a good new year. > > > > > Jon Morehouse > Moeller High School Class of 2009 > Pepperdine University 2009-2010 > University of Southern California Class of 2013 > > > <Signature Final (2).jpg> > > On Jan 1, 2012, at 8:59 AM, Lukas Lewandowski wrote: > >> Hi Jon Morehouse, >> >> You can use BaseX to create a database (a collection) of all your XML files. You can find some information here [1]. >> Additionally you can create a full-text index to support fast access of keywords within text nodes, see also [2]. >> >> Afterwards you can access/query your database e.g., using the REST API [3] or a client API [4,5]. >> >> Which size does one XML file have? >> >> regards >> Lukas >> >> [1] http://docs.basex.org/wiki/Commands#CREATE_DATABASE >> [2] http://docs.basex.org/wiki/Full-Text >> [3] http://docs.basex.org/wiki/REST >> [4] http://docs.basex.org/wiki/Clients >> [5] https://github.com/BaseXdb/basex-api/tree/master/src/main/php >> >> >> On Jan 1, 2012, at 9:12 AM, Jon Morehouse wrote: >> >>> I am new to BaseX and am excited to be moving forward with this product. Right now I am setting up a website where I want to be able to query across millions of xml files. For instance, if each file contains different keywords, I would like to query across each file to match them with a list of say, my top 50 keywords, to find which files have the most keywords present, the most amount of times. Would something like this be possible with basex? It seems like it would be a simple xquery piece using php (the list of keywords is coming from mysql) but with each xml being its own xml file, would it be possible to search across each and every database/file. >>> >>> >>> >>> >>> >>> Jon Morehouse >>> Moeller High School Class of 2009 >>> Pepperdine University 2009-2010 >>> University of Southern California Class of 2013 >>> >>> >>> <Signature Final (2).jpg> >>> >>> _______________________________________________ >>> BaseX-Talk mailing list >>> BaseX-Talk(a)mailman.uni-konstanz.de >>> https://mailman.uni-konstanz.de/mailman/listinfo/basex-talk >> >

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Query Across/Many XML Files With BaseX
by Jon Morehouse 01 Jan '12

01 Jan '12

I am new to BaseX and am excited to be moving forward with this product. Right now I am setting up a website where I want to be able to query across millions of xml files. For instance, if each file contains different keywords, I would like to query across each file to match them with a list of say, my top 50 keywords, to find which files have the most keywords present, the most amount of times. Would something like this be possible with basex? It seems like it would be a simple xquery piece using php (the list of keywords is coming from mysql) but with each xml being its own xml file, would it be possible to search across each and every database/file. Jon Morehouse Moeller High School Class of 2009 Pepperdine University 2009-2010 University of Southern California Class of 2013

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Re: [basex-talk] HTTP Request returns 413 FULL. Where is configuration file?
by Lukas Lewandowski 31 Dec '11

31 Dec '11

Good news. Lukas On Dec 31, 2011, at 2:08 AM, France Baril wrote: > I had not try, and though I still haven't, I think that has just answered my question… since it lead me to read this: "Maximum URL length is 2083 characters". Src: http://www.cs.tut.fi/~jkorpela/forms/methods.html#exc. > > > > On Wed, Dec 28, 2011 at 2:32 PM, Lukas Lewandowski <lukas.lewandowski(a)uni-konstanz.de> wrote: > Did you try to send your query via POST? > > > On Dec 28, 2011, at 5:24 PM, France Baril wrote: > >> I use Ruby >> The request is: >> searchquery = searchquery + s_paramlist >> uri = URI.parse("http://localhost:8984/rest/KnowledgeBase/Content?query=" + searchquery ) >> http = Net::HTTP.new(uri.host, uri.port) >> request = Net::HTTP::Get.new(uri.request_uri) >> request.basic_auth("user1", "user1") >> response = http.request(request) >> # decode allows query to return %26 and ruby to understand '&' as not '&' >> result=URI.decode(response.body) >> if (response.code != "200") >> @search = "ERROR: " + response.code + ' ' + response.message >> else >> @search = result.html_safe >> $currentsearch = @search >> end >> The query works when the list of topics under 'limit to' is short, not when it's long: >> xquery version "1.0"; >> declare variable $kwoperator as xs:string := "all"; >> (:For each topic type, create box:) >> <div style="font-size: 10pt;"> >> <form action="start" method="get"> >> <div> >> <input type="text" name="keywords" value="Search for..." size="42"/> >> {if ($kwoperator ='any') then >> <span><br/> >> %26%23160%3B%0D%0A<input type="radio" name="kwoperator" value="all" /> Contains <b>all</b> these words <br/> >> %26%23160%3B%0D%0A<input type="radio" name="kwoperator" value="any" checked="yes"/> Contains <b>any</b> of these words <br/> >> </span> >> else >> <span><br/> >> %26%23160%3B%0D%0A<input type="radio" name="kwoperator" value="all" checked="yes" /> Contains <b>all</b> these words <br/> >> %26%23160%3B%0D%0A<input type="radio" name="kwoperator" value="any" /> Contains <b>any</b> of these words <br/> >> </span> >> } >> <input class="submit" type="submit" value="Search" /> >> <br/> >> </div> >> <div> >> <p><i>Limit topics to:</i></p> >> { for $x in distinct-values(//*[contains(@class, ' topic/topic ')]/name()) >> order by $x >> return <span>{"%26%23160%3B%0D%0A"}<input type="radio" name="topic" value="{$x}" />{concat(' ', $x)}<br/></span> >> } >> <input class="submit" type="submit" value="Refine" /> >> <br/> >> </div> >> </form> >> </div> >> >> Thanks, >> >> France >> >> On Wed, Dec 28, 2011 at 6:22 AM, Lukas Lewandowski <lukas.lewandowski(a)uni-konstanz.de> wrote: >> Hi France, >> >> I have several questions: >> >> What HTTP client do you use? >> Which HTTP method do you use? How does the request look like? >> How big is your data you want to store/request? >> >> regards >> Lukas >> >> On Dec 28, 2011, at 12:41 AM, France Baril wrote: >> >> > Hi, >> > >> > After about 2620 characters on a response for an HTTP:Request, I get a 413 FULL error. >> > >> > I looked at the .basex configuration file and at the httpserver startup options, but couldn't find a way to change configuration for response size. >> > >> > Should I be looking for the Jetty config? I searched for jetty.xml, but only found it under olderapp/jetty.xml. Nothing that resemble 'baseX/jetty.xml'. >> > >> > Do you know how I can resolve this issue? >> > >> > I'm on Mac OsX - Snow Leopard. >> > >> > Thanks, >> > >> > France >> > >> > _______________________________________________ >> > BaseX-Talk mailing list >> > BaseX-Talk(a)mailman.uni-konstanz.de >> > https://mailman.uni-konstanz.de/mailman/listinfo/basex-talk >> >> >> >> >> -- >> France Baril >> Architecte documentaire / Documentation architect >> france.baril(a)architextus.com >> (514) 572-0341 > > > > > -- > France Baril > Architecte documentaire / Documentation architect > france.baril(a)architextus.com > (514) 572-0341

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HTTP Request returns 413 FULL. Where is configuration file?
by France Baril 28 Dec '11

28 Dec '11

Hi, After about 2620 characters on a response for an HTTP:Request, I get a 413 FULL error. I looked at the .basex configuration file and at the httpserver startup options, but couldn't find a way to change configuration for response size. Should I be looking for the Jetty config? I searched for jetty.xml, but only found it under olderapp/jetty.xml. Nothing that resemble 'baseX/jetty.xml'. Do you know how I can resolve this issue? I'm on Mac OsX - Snow Leopard. Thanks, France

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one text item per line output
by jidanni＠jidanni.org 27 Dec '11

27 Dec '11

Do I really need to do all this just to get one item per line $ basex -s format=no -q 'doc("...")//.../*:name/concat(text(),"
")' AM 594 復興1 AM 612 中央 AM 630 台灣 AM 657 正聲 I use -s format=no to turn off spaces. -s format=text not much help. There really ought to be a -s option to say I want newlines instead of spaces. In perl all we need is perl -l. OK, maybe Windows users also need CRLFs (\r\n).

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jdbc driver
by Francesco Beretta 26 Dec '11

26 Dec '11

Hi, I'm trying to initialize a connection to a postgresql database : Query: sql:init("org.postgresql.Driver") Error: [FOSQ0007] Could not initialize specified driver: 'org.postgresql.Driver' What is the right syntax to initialize the driver? Could you provide me with an exemple ? Where should I put the jdbc driver jar ? Many thanks Francesco Beretta

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Единая Дисконтная Система
by DISCOUNTKA 23 Dec '11

23 Dec '11

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Limit of namespaces per database
by Stefaniuk Marcin 22 Dec '11

22 Dec '11

I have fairly big set of webservice (WSDL+XSD). I'm considering switch from eXist to BaseX but when I'm trying to create database with initial import of the set but it stops after few elements. Limit of 256 namespaces is real shortcoming. Regards --- Marcin Stefaniuk PKO Bank Polski Departament Rozwoju Aplikacji Sprzedażowych i Wsparcia Wydział Rozwoju Platform Usług i Procesów Biznesowych Warszawa, ul. Puławska 15 tel. +48 22 580 30 39

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Precompiling Queries
by Dave Glick 21 Dec '11

21 Dec '11

Hello again, I notice in the current sources for QueryProcessor.java that executing a query appears to be a three-stage process: parse, compile, and execute. Is it now possible to preparse and/or precompile a query before using it? If so, this raises a couple important questions: - Does executing the query "destroy" it (will subsequent executions return the same results)? - What can be done to the query after parsing or compiling? Can I rerun a query after changing the context? What about after adjusting the variable bindings? I notice that doing either of these in QueryProcessor does not reset the parse or compile flag... The last time I looked at this, neither of the operations above were possible making preparsing and precompiling kind of pointless for embedded use. If this works now, it's very exciting and could save a lot of cycles in cases where a complex query needs to be repeatedly executed against different contexts or with different variables. Thanks, Dave

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Possible Optimization Bug (Or Maybe Document Insertion Bug)
by Dave Glick 20 Dec '11

20 Dec '11

Hello, I seem to have stumbled on a bug (or at least I think I have). Do the following: - Create a simple database with a single document - Insert a text node before the start of the document root ("insert node "test" before /root") - Attempt to optimize the database You will get a NullPointerException at org.basex.index.Names.index(Names.java:84). It appears as though the index is attempting to set statistics information for key id 0 (because the parent is a document), but the stats[] array only gets initialized with objects from index 1 and up. The other possibility is that text nodes should not be allowed before or after the document root element. I'm a little hazy on what the standards say in this regard. My understanding is that the document node can have prolog content before the root and other content after. I've also seen many documents which parse correctly that have text content before the opening tag (though again, this may not be strictly standard-compliant behavior). If this is the case, then the bug is probably that the insertion update operation is allowed to succeed. Dave

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Re: [basex-talk] Possible Optimization Bug (Or Maybe Document Insertion Bug)
by Dave Glick 20 Dec '11

20 Dec '11

Christian, Try the following: "create db db <a/>;xquery insert node "text" before /a;optimize" This gives me the error reported below. I ran it from the GUI, though I'm guessing that shouldn't make a difference. It appears as though the difference is in the insertion of text content (as opposed to node content). Though I now see three possible problems (or not) based on your example and its success: - A NullPointerException during optimize after inserting text content before the root element of a document. - The ability to insert text content before the root element of a document (should this be allowed?) - The ability to insert a second node before the root element of a document (should this be allowed?) Dave -----Original Message----- From: Christian Grün [mailto:christian.gruen@gmail.com] Sent: Tuesday, December 20, 2011 4:34 PM To: Dave Glick Cc: BaseX Subject: Re: [basex-talk] Possible Optimization Bug (Or Maybe Document Insertion Bug) Dave, thanks for the valuable observation and the hints what could be the reason. I didn't manage to reproduce the problem, though. This is what I tried: basex -c "create db db <a/>;xquery insert node <b/> before /a;optimize" Do you have a little example that leads to the discussed problem? Next, I'll also be glad to look at one of the documents with text before the root node that is erroneously accepted by our parser. Thanks! Christian ___________________________ On Tue, Dec 20, 2011 at 6:32 PM, Dave Glick <dglick(a)dracorp.com> wrote: > Hello, > > I seem to have stumbled on a bug (or at least I think I have). Do the following: > > - Create a simple database with a single document > - Insert a text node before the start of the document root ("insert > node "test" before /root") > - Attempt to optimize the database > > You will get a NullPointerException at org.basex.index.Names.index(Names.java:84). It appears as though the index is attempting to set statistics information for key id 0 (because the parent is a document), but the stats[] array only gets initialized with objects from index 1 and up. > > The other possibility is that text nodes should not be allowed before or after the document root element. I'm a little hazy on what the standards say in this regard. My understanding is that the document node can have prolog content before the root and other content after. I've also seen many documents which parse correctly that have text content before the opening tag (though again, this may not be strictly standard-compliant behavior). If this is the case, then the bug is probably that the insertion update operation is allowed to succeed. > > Dave > > > _______________________________________________ > BaseX-Talk mailing list > BaseX-Talk(a)mailman.uni-konstanz.de > https://mailman.uni-konstanz.de/mailman/listinfo/basex-talk

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database corruption after update query
by Adrian Hossu 20 Dec '11

20 Dec '11

Hello all, first the info: basex 7.0.2 debian 64bit jre 1.6.0_30-b12 We are experiencing some strange behaviour with basex - certain update queries are causing our database to become corrupted, and we need to drop the database and re-import in order to be able to continue. Here is an example of such a query: replace node collection("ft")/user/user[@id='2']/logsheets/logsheet[@date='2011-12-20']/exercise[2] with <exercise/> The query executes successfully, however, executing db:list('ft') after this call gives us only garbled text. The basexgui shows the results of this as: >_'蘼 &#x16 ..................etc.... Perhaps it's the query, or our original data which we are starting with? Any help would be greatly appreciated. best regards, Adrian

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Approaches to Implement OpenID/OAuth 2.0 with BaseX
by Eric Murphy 20 Dec '11

20 Dec '11

I am looking at what may be involved to implement OAuth 2.0 for BaseX. I guess the purpose of this would be to verify credentials against a BaseX whitelist that can only be modified by a system administrator. The authentication would be required for REST access to BaseX. Has anyone already given this some thought? Thanks, Eric

2 1

Namespace Bug!
by Truong An Nguyen 20 Dec '11

20 Dec '11

Hello, When I tried to execute the query in the file query.xq on the XML file DiagCom.otx, BaseX generated the false namespace for the following element <action>: <action xmlns="http://iso.org/OTX/StandardInterface/Event" name="GetComChannel0" id="id_f87ea71dd006450c9aa5085c9648d8e9"> (xmlns shouldn't be generated here) Could you please quickly fix this error for me? Many thanks. Cheers, An

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streaming the output to another file in BaseX database
by Huy Vu 19 Dec '11

19 Dec '11

Hello, I am writing my code in Java and the result after querying xml files in my BaseX database is very large, about 500MB. Thus, I would like to stream the output to another xml file in the BaseX database. Could you tell me how to do this? Many thanks, Huy Vu -- Huy Vu Oxford University, United Kingdom http://www.cs.ox.ac.uk/people/huy.vu/

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Using the BaseX REST interface from JavaScript
by Michael Piotrowski 19 Dec '11

19 Dec '11

Hi, I'm new at this, so please excuse if I missed something obvious... BaseX implements a REST interface via basexhttp and JavaScript frameworks like Ext JS allow you to use a REST interface for accessing data. So I thought it may be possible to create a Web interface to a corpus stored in BaseX that enables users to search the corpus and update the annotations *without* writing server-side code. The first obstacle I encountered is that under the same-orgin policy browsers consider localhost and localhost:8984 two separate domains and inhibit XmlHttpRequests calls, and basexhttp seems not to support cross-origin resource sharing (see <http://enable-cors.org/>). Using BaseX as a data store for an Ext JS component without having to write server-side code seems very attractive. However, I'm now wondering whether this approach makes sense at all. Has anybody tried to do something like this? Thanks in advance! Best regards -- Dr.-Ing. Michael Piotrowski, M.A. <mxp(a)cl.uzh.ch> Institute of Computational Linguistics, University of Zurich Phone +41 44 63-54313 | OpenPGP public key ID 0x1614A044 * OUT NOW: Systems and Frameworks for Computational Morphology * <http://www.springeronline.com/978-3-642-23137-7>

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Approaches for XML merging and conflict resolution
by Eric Murphy 19 Dec '11

19 Dec '11

All, I am looking at using BaseX for a prototype that requires synchronization of XML data. In other words, XML documents may need to be merged and there might be conflicts. This seems like a complex issue and I wonder if anyone has conquered this before. The only thing that I can think of to do is to version nodes which may have conflicts. For example: <person> <name> <first version="2">Erik</first>  <last version="1">Murphy</last> </name> </person> If I do a merge and the <first> version is >= last known version (1) + 1 ( which is 2 or greater), then I would know there is a conflict. A possible solution is there could be a deferment of conflict resolution, and data could be inserted like this: <person> <name> <first version="3">Eric</first>  <first version="2">Erik</first> <last version="1">Murphy</last> </name> </person> The application would be responsible for resolving the conflict when the nodes are read at a later time. Like I said, this all seems very complicated, so maybe there is an elegant solution which I have not thought of. Thank you, Eric Murphy

1 0

BaseX Meetup, XML Prague
by Christian Grün 18 Dec '11

18 Dec '11

Dear all, we’re glad to announce the first BaseX Meetup aligned with the XML Prague Conference. The meetup will take place if we know that there will be enough participants on site, so.. you are invited to join in as soon as possible! http://lanyrd.com/2012/basexprague Note that your registration is non-binding, and free if you will participate at the main conference as well ...which is cheap, a really great opportunity which you shouldn't miss anyway! Find some more information on XML Prague on this page: http://www.xmlprague.cz Looking forward to meeting you live, Christian ___________________________ BaseX Team Christian Grün Uni KN, Box 188 D-78457 Konstanz http://www.basex.org

1 0

incremental update of index
by Fabrice Etanchaud 13 Dec '11

13 Dec '11

dear all at BaseX, concerning BaseX 7.1 beta, Are incremental index updated after db:add, db:replace and db:delete calls ? best regards, Fabrice ETANCHAUD Senior Software Engineer edital Berkenlaan 1 B-1831 Brussels, Belgium <skype:fabrice.etanchaud?call> +32 2 716 32 32 general +32 2 716 32 20 fax fetanchaud(a)edital.com corsearch.com <http://www.corsearch.com/> | edital.com <http://www.edital.com/> Confidentiality Notice: This email and its attachments (if any) contain confidential information of the sender. The information is intended only for the use by the direct addressees of the original sender of this email. If you are not an intended recipient of the original sender (or responsible for delivering the message to such person), you are hereby notified that any review, disclosure, copying, distribution or the taking of any action in reliance of the contents of and attachments to this email is strictly prohibited. If you have received this email in error, please immediately notify the sender at the address shown herein and permanently delete any copies of this email (digital or paper) in your possession.

2 1

Whatever happened to DeepFS
by Andy Bunce 13 Dec '11

13 Dec '11

Hi, I was looking for this feature in version 7. https://mailman.uni-konstanz.de/pipermail/basex-talk/2011-January/000994.ht… says it was temporarily removed from the GUI but create fs [name] [path] gives an error in 7.0.1. Is this feature gone for good now? /Andy

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